3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06568

Details:

PFam ID : PF06568

PFam Domain Description : Domain of unknown function (DUF1127)

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 467

Average sequence length: 40.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06568	A5EJT8_BRASB_4_43	15.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06568	A7IPC6_XANP2_34_73	95.4

Sequence based PCA Plot of the family - PF06568 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=11
Motif2 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay