3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06567

Details:

PFam ID : PF06567

PFam Domain Description : Neural chondroitin sulphate proteoglycan cytoplasmic domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 12

Average sequence length: 69.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06567	CSPG5_CHICK_53_356	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06567	A5PLG4_DANRE_260_334	100

Sequence based PCA Plot of the family - PF06567 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay