3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06564

Details:

PFam ID : PF06564

PFam Domain Description : YhjQ protein

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 99

Average sequence length: 238.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06564	D4ZDH9_SHEVD_1_261	75.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06564	D4ZDH9_SHEVD_1_261	100

Sequence based PCA Plot of the family - PF06564 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=83 Length=8
Motif2 Start=123 Length=8
Motif3 Start=33 Length=17
Motif4 Start=10 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay