3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06560

Details:

PFam ID : PF06560

PFam Domain Description : Glucose-6-phosphate isomerase (GPI)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 107

Average sequence length: 153.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06560	Q2C5V5_9GAMM_282_370	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06560	C9XDT6_SALTD_31_215	100

Sequence based PCA Plot of the family - PF06560 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=17
Motif2 Start=1 Length=8
Motif3 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay