3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06553

Details:

PFam ID : PF06553

PFam Domain Description : BNIP3

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 56

Average sequence length: 169.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06553	A7SPX3_NEMVE_1_86	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06553	Q4RZ31_TETNG_1_180	100

Sequence based PCA Plot of the family - PF06553 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay