3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06546

Details:

PFam ID : PF06546

PFam Domain Description : Vertebrate heat shock transcription factor

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 52

Average sequence length: 201.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06546	B4NVB7_DROSI_30_175	17.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06546	HSF_XENLA_236_446	98.0

Sequence based PCA Plot of the family - PF06546 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay