3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06543

Details:

PFam ID : PF06543

PFam Domain Description : Lactococcus bacteriophage repressor

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 11

Average sequence length: 45.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06543	E3MMJ2_CAERE_63_188	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06543	Q9AZF5_9CAUD_66_122	100

Sequence based PCA Plot of the family - PF06543 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=21
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay