3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06527

Details:

PFam ID : PF06527

PFam Domain Description : TniQ

Number of Sequence in 50% Dataset : 220

Number of Sequence in Full Dataset : 295

Average sequence length: 136.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06527	B3Q0G0_RHIE6_10_104	99.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06527	Q5YMP6_NOCFA_3_174	100

Sequence based PCA Plot of the family - PF06527 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay