3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06524

Details:

PFam ID : PF06524

PFam Domain Description : NOA36 protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 91

Average sequence length: 179.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06524	E1FW17_LOALO_1_114	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06524	A7SH11_NEMVE_1_191	100

Sequence based PCA Plot of the family - PF06524 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=52 Length=8
Motif2 Start=36 Length=11
Motif3 Start=138 Length=14
Motif4 Start=102 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay