Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06522
Details:

PFam ID : PF06522

PFam Domain Description : NADH-ubiquinone reductase complex 1 MLRQ subunit

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 181

Average sequence length: 68.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF06522E9C1Q2_9EUKA_12_6363.1
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF06522D0MWF1_PHYIT_17_9998.8
Sequence based PCA Plot of the family - PF06522 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay