3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06508

Details:

PFam ID : PF06508

PFam Domain Description : ExsB

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 834

Average sequence length: 132.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06508	D0US99_9BILA_45_172	93.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06508	B8I0Z1_CLOCE_67_193	100

Sequence based PCA Plot of the family - PF06508 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=88 Length=8
Motif3 Start=121 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay