3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06507

Details:

PFam ID : PF06507

PFam Domain Description : Auxin response factor

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 201

Average sequence length: 79.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06507	ARFT_ORYSJ_254_336	23.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06507	F0ZY42_DICPU_1362_1434	98.5

Sequence based PCA Plot of the family - PF06507 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=45 Length=8
Motif2 Start=11 Length=17
Motif3 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay