3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06505

Details:

PFam ID : PF06505

PFam Domain Description : Activator of aromatic catabolism

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 114

Average sequence length: 99.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06505	F2F494_9BACL_8_77	52.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06505	O06645_9PSED_24_129	100

Sequence based PCA Plot of the family - PF06505 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=89 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay