3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06500

Details:

PFam ID : PF06500

PFam Domain Description : Alpha/beta hydrolase of unknown function (DUF1100)

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 113

Average sequence length: 339.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06500	A6D9N5_9VIBR_1_274	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06500	A6D9N5_9VIBR_1_274	100

Sequence based PCA Plot of the family - PF06500 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=136 Length=8
Motif2 Start=5 Length=8
Motif3 Start=231 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay