3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06495

Details:

PFam ID : PF06495

PFam Domain Description : Fruit fly transformer protein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 32

Average sequence length: 138.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06495	B4LB81_DROVI_1_167	30

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06495	A9QDQ7_9MUSC_147_255	96.7

Sequence based PCA Plot of the family - PF06495 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay