3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06490

Details:

PFam ID : PF06490

PFam Domain Description : Viral coat protein

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 94

Average sequence length: 110.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06490	B3PEX8_CELJU_6_127	53.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06490	B3PEX8_CELJU_6_127	100

Sequence based PCA Plot of the family - PF06490 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=18
Motif3 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay