3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06483

Details:

PFam ID : PF06483

PFam Domain Description : Chitinase C

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 61

Average sequence length: 175.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06483	B2TKM0_CLOBB_468_606	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06483	Q8VLQ3_PSEO7_788_978	100

Sequence based PCA Plot of the family - PF06483 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=66 Length=11
Motif3 Start=122 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay