3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06481

Details:

PFam ID : PF06481

PFam Domain Description : COX Aromatic Rich Motif

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 251

Average sequence length: 46.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06481	A6VRF2_MARMS_245_296	5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06481	Q5X8F9_LEGPA_212_258	96.8

Sequence based PCA Plot of the family - PF06481 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=40 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay