3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06480

Details:

PFam ID : PF06480

PFam Domain Description : FtsH Extracellular

Number of Sequence in 50% Dataset : 433

Number of Sequence in Full Dataset : 1418

Average sequence length: 99.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06480	B9HP69_POPTR_129_335	61.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06480	C2L137_9FIRM_17_224	98.0

Sequence based PCA Plot of the family - PF06480 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=52 Length=8
Motif3 Start=123 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay