3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06478

Details:

PFam ID : PF06478

PFam Domain Description : Coronavirus RPol N-terminus

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 26

Average sequence length: 318.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06478	B6VDY6_9GAMC_3670_4028	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06478	B6VDY6_9GAMC_3670_4028	100

Sequence based PCA Plot of the family - PF06478 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay