3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06474

Details:

PFam ID : PF06474

PFam Domain Description : MltD lipid attachment motif

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 14

Average sequence length: 28.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06474	F1QLT3_DANRE_34_279	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06474	Q4ZVL4_PSEU2_1_34	69

Sequence based PCA Plot of the family - PF06474 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay