3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06472

Details:

PFam ID : PF06472

PFam Domain Description : ABC transporter transmembrane region 2

Number of Sequence in 50% Dataset : 168

Number of Sequence in Full Dataset : 640

Average sequence length: 260.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06472	Q6SRD3_CVHSA_1_216	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06472	E9IDW4_SOLIN_62_228	100

Sequence based PCA Plot of the family - PF06472 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay