3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06471

Details:

PFam ID : PF06471

PFam Domain Description : NSP11

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 33

Average sequence length: 516.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06471	Q6SRD3_CVHSA_1_216	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06471	R1AB_PEDV7_5621_6211	100

Sequence based PCA Plot of the family - PF06471 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=54 Length=8
Motif3 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay