3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06469

Details:

PFam ID : PF06469

PFam Domain Description : Domain of Unknown Function (DUF1088)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 36

Average sequence length: 155.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06469	D8LL16_ECTSI_3029_3141	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06469	C4QD90_SCHMA_1416_1606	100

Sequence based PCA Plot of the family - PF06469 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=72 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay