3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06467

Details:

PFam ID : PF06467

PFam Domain Description : MYM-type Zinc finger with FCS sequence motif

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 179

Average sequence length: 41.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06467	A3DG45_CLOTH_3_41	46.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06467	C3ZM35_BRAFL_306_346	93.8

Sequence based PCA Plot of the family - PF06467 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=8
Motif2 Start=31 Length=8
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay