3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06465

Details:

PFam ID : PF06465

PFam Domain Description : Domain of Unknown Function (DUF1087)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 61

Average sequence length: 62.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06465	B9SCD7_RICCO_1273_1327	63.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06465	D7G7A4_ECTSI_1463_1511	96.6

Sequence based PCA Plot of the family - PF06465 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=38 Length=8
Motif2 Start=1 Length=18
Motif3 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay