3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06463

Details:

PFam ID : PF06463

PFam Domain Description : Molybdenum Cofactor Synthesis C

Number of Sequence in 50% Dataset : 94

Number of Sequence in Full Dataset : 1149

Average sequence length: 127.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06463	Q4S882_TETNG_1046_1101	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06463	E6QSW8_9ZZZZ_198_341	100

Sequence based PCA Plot of the family - PF06463 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=93 Length=8
Motif2 Start=56 Length=8
Motif3 Start=69 Length=14
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay