3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06461

Details:

PFam ID : PF06461

PFam Domain Description : Domain of Unknown Function (DUF1086)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 44

Average sequence length: 125.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06461	Q9SZ57_ARATH_789_866	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06461	E4Y195_OIKDI_1014_1167	100

Sequence based PCA Plot of the family - PF06461 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=53 Length=8
Motif4 Start=109 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay