3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06460

Details:

PFam ID : PF06460

PFam Domain Description : Coronavirus NSP13

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 39

Average sequence length: 268.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06460	B6VDY6_9GAMC_6028_6306	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06460	B6VDY6_9GAMC_6028_6306	100

Sequence based PCA Plot of the family - PF06460 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=176 Length=8
Motif2 Start=215 Length=8
Motif3 Start=3 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay