3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06458

Details:

PFam ID : PF06458

PFam Domain Description : MucBP domain

Number of Sequence in 50% Dataset : 262

Number of Sequence in Full Dataset : 732

Average sequence length: 103.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06458	ECAB_ECTTU_1_34	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06458	C5FAT7_LACPA_1_60	99.8

Sequence based PCA Plot of the family - PF06458 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=8
Motif2 Start=1 Length=18
Motif3 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay