3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06456

Details:

PFam ID : PF06456

PFam Domain Description : Arfaptin-like domain

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 102

Average sequence length: 192.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06456	F2TVD9_9EUKA_304_470	21.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06456	C4QH00_SCHMA_70_321	100

Sequence based PCA Plot of the family - PF06456 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=138 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay