3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06455

Details:

PFam ID : PF06455

PFam Domain Description : NADH dehydrogenase subunit 5 C-terminus

Number of Sequence in 50% Dataset : 335

Number of Sequence in Full Dataset : 2642

Average sequence length: 167.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06455	D7F2K5_9EUCA_1_103	90.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06455	Q8HMM4_ATRSP_425_528	99.9

Sequence based PCA Plot of the family - PF06455 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=127 Length=8
Motif2 Start=186 Length=8
Motif3 Start=34 Length=14
Motif4 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay