3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06452

Details:

PFam ID : PF06452

PFam Domain Description : Domain of unknown function (DUF1083)

Number of Sequence in 50% Dataset : 158

Number of Sequence in Full Dataset : 345

Average sequence length: 178.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06452	C4XN71_DESMR_454_536	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06452	D1N8J2_9BACT_37_259	100

Sequence based PCA Plot of the family - PF06452 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=82 Length=8
Motif2 Start=37 Length=8
Motif3 Start=65 Length=11
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay