3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06446

Details:

PFam ID : PF06446

PFam Domain Description : Hepcidin

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 73

Average sequence length: 55.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06446	A7FIY4_YERP3_12_79	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06446	Q0H7E9_EPIAW_32_87	100

Sequence based PCA Plot of the family - PF06446 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=13 Length=8
Motif3 Start=4 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay