3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06445

Details:

PFam ID : PF06445

PFam Domain Description : GyrI-like small molecule binding domain

Number of Sequence in 50% Dataset : 664

Number of Sequence in Full Dataset : 1820

Average sequence length: 152.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06445	A7FIY4_YERP3_12_79	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06445	D4X0U8_BACOV_1_67	98.6

Sequence based PCA Plot of the family - PF06445 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=58 Length=8
Motif4 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay