3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06444

Details:

PFam ID : PF06444

PFam Domain Description : NADH dehydrogenase subunit 2 C-terminus

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 5222

Average sequence length: 54.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06444	A7FIY4_YERP3_12_79	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06444	A3QZA7_9SMEG_288_343	94.1

Sequence based PCA Plot of the family - PF06444 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=47 Length=8
Motif2 Start=2 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay