3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06441

Details:

PFam ID : PF06441

PFam Domain Description : Epoxide hydrolase N terminus

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 524

Average sequence length: 109.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06441	A7FIY4_YERP3_12_79	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06441	Q2H163_CHAGB_18_160	100

Sequence based PCA Plot of the family - PF06441 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=18
Motif3 Start=75 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay