3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06440

Details:

PFam ID : PF06440

PFam Domain Description : DNA polymerase III, theta subunit

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 60

Average sequence length: 69.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06440	A7FIY4_YERP3_12_79	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06440	D8MJA5_ERWBE_1_58	98.3

Sequence based PCA Plot of the family - PF06440 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=28
Motif2 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay