3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06439

Details:

PFam ID : PF06439

PFam Domain Description : Domain of Unknown Function (DUF1080)

Number of Sequence in 50% Dataset : 279

Number of Sequence in Full Dataset : 757

Average sequence length: 192.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06439	C4S5E0_YERBE_13_231	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06439	F0SIT9_PLABD_30_229	100

Sequence based PCA Plot of the family - PF06439 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay