3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06438

Details:

PFam ID : PF06438

PFam Domain Description : Heme-binding protein A (HasA)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 43

Average sequence length: 195.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06438	C4S5E0_YERBE_13_231	26.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06438	C4T6T6_YERIN_1_227	100

Sequence based PCA Plot of the family - PF06438 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=157 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay