3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06437

Details:

PFam ID : PF06437

PFam Domain Description : IMP-specific 5'-nucleotidase

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 77

Average sequence length: 359.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06437	D8TZT1_VOLCA_1_119	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06437	Q8I5Y4_PLAF7_47_429	100

Sequence based PCA Plot of the family - PF06437 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=108 Length=8
Motif3 Start=84 Length=8
Motif4 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay