3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06434

Details:

PFam ID : PF06434

PFam Domain Description : Aconitate hydratase 2 N-terminus

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 262

Average sequence length: 210.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06434	D9QT39_ACEAZ_176_372	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06434	D9QT39_ACEAZ_176_372	100

Sequence based PCA Plot of the family - PF06434 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=64 Length=11
Motif2 Start=282 Length=17
Motif3 Start=4 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay