3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06433

Details:

PFam ID : PF06433

PFam Domain Description : Methylamine dehydrogenase heavy chain (MADH)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 44

Average sequence length: 323.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06433	C7L7R3_ACEPA_50_397	94.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06433	C7L7R3_ACEPA_50_397	100

Sequence based PCA Plot of the family - PF06433 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=62 Length=8
Motif2 Start=148 Length=8
Motif3 Start=135 Length=8
Motif4 Start=243 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay