3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06429

Details:

PFam ID : PF06429

PFam Domain Description : Flagella basal body rod protein

Number of Sequence in 50% Dataset : 203

Number of Sequence in Full Dataset : 3246

Average sequence length: 77.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06429	D2L1T1_9DELT_10_119	6.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06429	D2L1T1_9DELT_10_119	100

Sequence based PCA Plot of the family - PF06429 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=8
Motif2 Start=72 Length=8
Motif3 Start=83 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay