3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06428

Details:

PFam ID : PF06428

PFam Domain Description : GDP/GTP exchange factor Sec2p

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 137

Average sequence length: 98.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06428	A9UNZ6_MONBE_123_230	76.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06428	Q6C068_YARLI_69_188	100

Sequence based PCA Plot of the family - PF06428 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay