3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06427

Details:

PFam ID : PF06427

PFam Domain Description : UDP-glucose:Glycoprotein Glucosyltransferase

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 150

Average sequence length: 190.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06427	C4M0W6_ENTHI_719_890	79.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06427	E9ALL2_LEIME_1118_1353	100

Sequence based PCA Plot of the family - PF06427 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=91 Length=8
Motif4 Start=135 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay