3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06423

Details:

PFam ID : PF06423

PFam Domain Description : GWT1

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 154

Average sequence length: 142.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06423	D2UYC6_NAEGR_310_470	98.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06423	B7XIC7_ENTBH_288_425	100

Sequence based PCA Plot of the family - PF06423 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=26
Motif2 Start=181 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay