3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06422

Details:

PFam ID : PF06422

PFam Domain Description : CDR ABC transporter

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 574

Average sequence length: 98.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06422	C4JQD7_UNCRE_1222_1290	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06422	A8PTZ1_MALGO_796_912	100

Sequence based PCA Plot of the family - PF06422 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay