3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06421

Details:

PFam ID : PF06421

PFam Domain Description : GTP-binding protein LepA C-terminus

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 704

Average sequence length: 106.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06421	GUF1_CAEEL_532_645	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06421	C6D9I8_PECCP_479_586	100

Sequence based PCA Plot of the family - PF06421 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=60 Length=11
Motif3 Start=2 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay