3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06420

Details:

PFam ID : PF06420

PFam Domain Description : Mitochondrial genome maintenance MGM101

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 71

Average sequence length: 212.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06420	C9SWC5_VERA1_90_228	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06420	Q1Q562_9BACT_16_191	100

Sequence based PCA Plot of the family - PF06420 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=119 Length=8
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay